9e807b84-2da9-4c5b-857c-d48f55b5977e
eng
utf8
dataset
Animal and Plant Health Agency
APHAOpendata@apha.gsi.gov.uk
pointOfContact
2018-05-18T09:48:54
Gemini
2.2
http://www.opengis.net/def/crs/EPSG/0/27700
Complete list of translated genotype names (spoligotype:VNTR type).
APHA0126
2016-06-14
publication
2016-06-14
publication
17f1f7c2-0c92-4ec1-86ea-b4d67dbeb2cf
This dataset provides a list of translated genotype names (spoligotype:VNTR type) for bovine tuberculosis genotypes. Each isolate of bovine tuberculosis (bTB), usually one per herd breakdown, is spoligotyped and then VNTR typed at 6 loci. Together the spoligotype and VNTR type of an isolate are refered to as its genotype. Each unique spoligotype pattern is given a number, such as APHA Type 17 but the VNTR type is a complex set of 6 numbers such as 7-5-5-5*-3-3.1. To simplify the reporting of bTB genotypes the combination of spoligotype and VNTR type is 'translated' into a simpler format: spoligotype number followed by a colon followed by a letter. Thus, an isolate of APHA Type 17 and a VNTR type 7-5-5-5*-3-3.1 is known as genotype 17:a. This file lists the translation between simplified genotype and the original spoligotype/VNTR data. Attribution statement:
Animal and Plant Health Agency
APHAOpendata@apha.gsi.gov.uk
https://www.gov.uk/government/organisations/animal-and-plant-health-agency
Animal and Plant Health Agency Website
pointOfContact
notPlanned
OpenData
theme
Open Government Licence
otherRestrictions
license
copyright
There are no public access constraints to this data. Use of this data is subject to the licence identified.
vector
eng
utf8
environment
true
-8.45
1.78
49.86
60.86000000000001
true
http://data.ordnancesurvey.co.uk/doc/country/england
2003-05-28
2016-02-18
Open format | Comma Separated Values file (CSV)
Excel 2010
Open format | Comma Separated Values file (CSV)
Excel 2010
https://data.defra.gov.uk/Agriculture/APHA0126-Genotype_Names_18_Feb_2016.csv
http
dataset
NonGeographicDataset