Identification

Title

Tomographic data on the developmental biology of the Early Cambrian cnidarian Olivooides (NERC grant NE/J018325/1)

Abstract

The folders GMPKU2311, GMPKU3089, ELISN108-343 and ELISN31-5 contain data from X-ray tomographic analyses of fossil embryos and post-embryonic stages as described: There is one data folder provided for each specimen, each containing the following: - Raw data: zip archive containing the raw scan data (.tif image stack). - Working files: zip archive containing the segmented slices (.tif image stack exported from Avizo labels). - Avizo project: the Avizo .hx project file. - Avizo labels: the Avizo .am labels file, containing the segmentation information. - 3D model: the 3D surface computed from the segmented labels data (.stl file). In the case of GMPKU2311 only the raw data and 3D model file are provided, as the surface was computed directly from an isosurface of the specimen in Avizo. The individual slices (.tif images) can be viewed with standard graphics software, and the datasets can be studied in 3D using tomographic reconstruction software such as Avizo (www.vsg3d.com/), Spiers (www.spiers-software.org/), VG Studio Max (www.volumegraphics.com) etc. The Avizo project and label files (.hx and .am files) require Avizo software (www.vsg3d.com/) to be opened. The 3D models (.stl files) are widely compatible with 3D freeware packages such as MeshLab (http://meshlab.sourceforge.net/) or Blender (https://www.blender.org/), or with proprietary software, e.g. Avizo (www.vsg3d.com/), Geomagic (http://www.geomagic.com/en/), Mimics (http://biomedical.materialise.com/mimics). The files relate to the following publication: Dong, X.; Vargas, K.; Cunningham, J. A.; Zhang, H.; Liu, T.; Chen, F.; Liu, J.; Bengtson, S. & Donoghue, P. C. J. 2015. Developmental biology of the early Cambrian cnidarian Olivooides. Journal of Paleontology.

Resource type

nonGeographicDataset

Resource locator

https://data.bris.ac.uk/data/dataset/ig22c0fcvoen1qrvpuoctgij9

function: information

http://data.bris.ac.uk/datasets/tar/ig22c0fcvoen1qrvpuoctgij9.zip

function: download

http://dx.doi.org/10.1111/pala.12231

function: information

Unique resource identifier

code

http://data.bgs.ac.uk/id/dataHolding/13607249

codeSpace

Dataset language

eng

Spatial reference system

code identifying the spatial reference system

Classification of spatial data and services

Topic category

geoscientificInformation

Keywords

Keyword set

keyword value

originating controlled vocabulary

title

reference date

date type

publication

effective date

2008-06-01

Keyword set

keyword value

Cambrian

Fossils

Three dimensional models

originating controlled vocabulary

title

reference date

date type

revision

effective date

2011

Keyword set

keyword value

NERC_DDC

Geographic location

West bounding longitude

East bounding longitude

North bounding latitude

South bounding latitude

Temporal reference

Temporal extent

Begin position

2012-09-01

End position

2017-02

Dataset reference date

date type

publication

effective date

2016-02-16

Frequency of update

notApplicable

Quality and validity

Lineage

For methodology see https://data.bris.ac.uk/datasets/ig22c0fcvoen1qrvpuoctgij9/readme.txt

Conformity

Conformity report

specification

title

reference date

date type

publication

effective date

2011

degree

false

explanation

See the referenced specification

Conformity report

specification

title

reference date

date type

publication

effective date

2010-12-08

degree

false

explanation

See http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2010:323:0011:0102:EN:PDF

Data format

name of format

version of format

Constraints related to access and use

Constraint set

Limitations on public access

Constraint set

Limitations on public access

The copyright of materials derived from the British Geological Survey's work is vested in the Natural Environment Research Council [NERC]. No part of this work may be reproduced or transmitted in any form or by any means, or stored in a retrieval system of any nature, without the prior permission of the copyright holder, via the BGS Intellectual Property Rights Manager. Use by customers of information provided by the BGS, is at the customer's own risk. In view of the disparate sources of information at BGS's disposal, including such material donated to BGS, that BGS accepts in good faith as being accurate, the Natural Environment Research Council (NERC) gives no warranty, expressed or implied, as to the quality or accuracy of the information supplied, or to the information's suitability for any use. NERC/BGS accepts no liability whatever in respect of loss, damage, injury or other occurence however caused.

Responsible organisations

Responsible party

contact position

Earth Sciences

organisation name

University of Bristol

full postal address

Wills Memorial Building

Bristol

BS8 1RJ

email address

not available

responsible party role

pointOfContact

Metadata on metadata

Metadata point of contact

organisation name

British Geological Survey

full postal address

Environmental Science Centre,Keyworth

NOTTINGHAM

NG12 5GG

United Kingdom

telephone number

+44 115 936 3100

email address

enquiries@bgs.ac.uk

responsible party role

pointOfContact

Metadata date

2022-09-27

Metadata language