f397e842-b411-4256-b507-a4aa4647b914
English
ISO/IEC 8859-1 (also known as Latin 1)
dataset
dataset
Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg
Lancaster
LA1 4AP
UK
info@eidc.ac.uk
pointOfContact
2022-05-25T14:41:51
UK GEMINI
2.3
WGS 84
Parentage assignments from a genetic pedigree of a wild population of banded mongooses in Queen Elizabeth National Park, Uganda, 2000-2019
2022-05-25
publication
https://catalogue.ceh.ac.uk/id/f397e842-b411-4256-b507-a4aa4647b914
10.5285/f397e842-b411-4256-b507-a4aa4647b914
doi:
Thompson, F.J., Nichols, H.J., Cant, M.A. (2022). Parentage assignments from a genetic pedigree of a wild population of banded mongooses in Queen Elizabeth National Park, Uganda, 2000-2019. NERC EDS Environmental Information Data Centre 10.5285/f397e842-b411-4256-b507-a4aa4647b914
The data contains the genetic identity of parents (maternal and paternal identities and assignment probabilities) identified from DNA extracted from tail tips analysed using the MASTERBAYES program, for individual banded mongooses in a wild population on the Mweya Peninsula, Queen Elizabeth National Park, Uganda between 2000-2019.
A nine generation deep genetic pedigree was constructed from which maternity and paternity assignments were calculated. This data was used to calculate lifetime reproductive success for individuals in the population who were exposed to conflict with rival groups to determine the fitness costs and benefits of intergroup conflict. In addition the type of microsatellite panel used to genotype the DNA samples is recorded.
Full details about this dataset can be found at https://doi.org/10.5285/f397e842-b411-4256-b507-a4aa4647b914
Thompson, F.J.
University of Exeter
enquiries@ceh.ac.uk
author
Nichols, H.J.
Swansea University
enquiries@ceh.ac.uk
author
Cant, M.A.
University of Exeter
enquiries@ceh.ac.uk
author
Dr. Faye Thompson
University of Exeter
enquiries@ceh.ac.uk
pointOfContact
NERC EDS Environmental Information Data Centre
enquiries@ceh.ac.uk
custodian
NERC EDS Environmental Information Data Centre
enquiries@ceh.ac.uk
publisher
University of Exeter
enquiries@ceh.ac.uk
resourceProvider
Habitats and Biotopes
theme
GEMET - INSPIRE themes, version 1.0
2008-06-01
publication
Parentage
genetic pedigree
social evolution
banded mongooses
behavioural ecology
otherRestrictions
no limitations
otherRestrictions
This resource is available under the terms of the Open Government Licence
otherRestrictions
If you reuse this data, you should cite: Thompson, F.J., Nichols, H.J., Cant, M.A. (2022). Parentage assignments from a genetic pedigree of a wild population of banded mongooses in Queen Elizabeth National Park, Uganda, 2000-2019. NERC EDS Environmental Information Data Centre https://doi.org/10.5285/f397e842-b411-4256-b507-a4aa4647b914
textTable
1000
English
utf8
biota
2000-01-01
2019-12-31
29.767
30.107
-0.26
0.196
Comma-separated values (CSV)
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
distributor
https://data-package.ceh.ac.uk/data/f397e842-b411-4256-b507-a4aa4647b914
Download the data
Download a copy of this data
download
https://data-package.ceh.ac.uk/sd/f397e842-b411-4256-b507-a4aa4647b914.zip
Supporting information
Supporting information available to assist in re-use of this dataset
information
dataset
dataset
Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
2010-12-08
DNA was extracted from tail tip samples and genotyped for 35‒ 43 microsatellite loci. Parentage was primarily determined using the MASTERBAYES program. As well as individual genotypes, the program used phenotypic predictors (whether or not a female was recorded as giving birth, if a male was in the offspring’s natal group prior to birth, and the age and quadratic age of both males and females). A 9-generation deep genetic pedigree was constructed from which maternity and paternity assignments were calculated. To compile this dataset, we extracted adults from the pedigree who were alive in our population between 2000 and 2019, and for whom parentage assignments were >=0.9 (for offspring that were genotyped using the full panel of 43 microsatellite markers), or >=0.95 (for offspring that were genotyped using the subset panel of 35 microsatellite markers). This data was used to calculate lifetime reproductive success for individuals in the population who were exposed to conflict with rival groups to determine the fitness costs and benefits of intergroup conflict.