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Complete list of translated genotype names (spoligotype:VNTR type).

Publisher
Animal and Plant Health Agency
Updated
1 November 2023
Topic
Not set

Summary

This dataset provides a list of translated genotype names (spoligotype:VNTR type) for bovine tuberculosis genotypes. Each isolate of bovine tuberculosis (bTB), usually one per herd breakdown, is spoligotyped and then VNTR typed at 6 loci. Together the spoligotype and VNTR type of an isolate are refered to as its genotype. Each unique spoligotype pattern is given a number, such as APHA Type 17 but the VNTR type is a complex set of 6 numbers such as 7-5-5-5*-3-3.1. To simplify the reporting of bTB genotypes the combination of spoligotype and VNTR type is 'translated' into a simpler format: spoligotype number followed by a colon followed by a letter. Thus, an isolate of APHA Type 17 and a VNTR type 7-5-5-5*-3-3.1 is known as genotype 17:a. This file lists the translation between simplified genotype and the original spoligotype/VNTR data. Attribution statement: ©Crown Copyright, APHA 2016

Data links

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Additional information

Source Metadata
XML, HTML
Date added
01 November 2023
Harvest GUID
9e807b84-2da9-4c5b-857c-d48f55b5977e
Extent (Latitude)
60.86° to 49.86°
Extent (Longitude)
-8.45° to 1.78°
Spatial reference system
http://www.opengis.net/def/crs/EPSG/0/27700
Dataset reference date (publication)
2016-06-14
Frequency of update
notPlanned
Access constraints
There are no public access constraints to this data. Use of this data is subject to the licence identified.
Responsible party
Animal & Plant Health Agency (pointOfContact)
ISO 19139 resource type
dataset
Metadata language
eng

Contact

Enquiries

aphaopendata@apha.gov.uk

Freedom of information (FOI) requests

enquiries@apha.gov.uk

Licence information

Open Government Licence