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Multi-drug resistant bacteria in agricultural soil

Publisher
Environmental Information Data Centre
Updated
26 September 2018
Topic
Environment

Summary

This dataset identified bacteria able to grow in the presence of several Antibiotics in a British agricultural soil, by DNA stable isotope probing (SIP). The dataset was created with samples of the 'heavy' and 'light' fractions of the treatments and also from control soils. The 16S rRNA genes from these samples were amplified and sequenced by barcoded Illumina sequencing. Polymerase chain reaction (PCR) primers 515FB (GTGYCAGCMGCCGCGGTAA) and 806RB (GGACTACNVGGGTWTCTAAT) from the Earth Microbiome project targeting the V4 region of the 16S rRNA gene (approximately 250 nucleotides) were used. Library preparation and sequencing was performed at the National Oceanographic Centre (NOC) of the University of Southampton, UK, following methodologies described by Caporaso et al. (2012). Samples were pooled in an equimolar concentration and sequenced on separate runs for MiSeq using a 2 bp x 300 bp paired end protocol.

Data links

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Additional information

Source Metadata
XML, HTML
Date added
11 September 2018
Harvest GUID
595bca1f-9299-45d0-a224-a28ed136ea91
Extent (Latitude)
50.97° to 50.96°
Extent (Longitude)
-1.43° to -1.42°
Dataset reference date (publication)
2018-01-05
Frequency of update
notPlanned
Responsible party
University of Southampton (pointOfContact); EIDC (mediator)
ISO 19139 resource type
dataset
Metadata language
eng

Contact

Enquiries

m.t.hernandez-garcia@soton.ac.uk

Freedom of information (FOI) requests

foi@ceh.ac.uk

Freedom of Information (FOI) requests

Licence information

No restrictions